O2k-Publications: Topics: Difference between revisions

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== Preparations ==
== Preparations ==
* [[O2k-Publications: Intact Organism|Intact organism]] •• [[O2k-Publications: Intact Organ|Intact organ]] •• [[O2k-Publications:  Intact cells|Intact cells]] •• [[O2k-Publications: Permeabilized  cells|Permeabilized cells]] •• [[O2k-Publications:  Permeabilized_tissue|Permeabilized tissue]] •• [[O2k-Publications:  Homogenate|Homogenate]] •• [[O2k-Publications: Isolated  Mitochondria|Isolated mitochondria]] •• [[O2k-Publications: SMP|SMP]] •• [[O2k-Publications: Chloroplasts|Chloroplasts]] •• [[O2k-Publications: Enzyme|Enzyme]] •• [[O2k-Publications: Oxidase; Biochemical Oxidation|Oxidase and biochemical oxidation]]
::::{| class="wikitable sortable" style="text-align:center"
! #
! O2k-Publications
! MitoPedia:
! Comment
! O2k
! Total
|-
| 1
| [[O2k-Publications: Intact Organism|Intact organism]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and method::Oxygraph-2k]] [[Preparation::Intact organism]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Intact organism]] |format=count}}
|-
| 2
| [[O2k-Publications: Intact Organ|Intact organ]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Intact organ]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Intact organ]] |format=count}}
|-
| 3
| [[O2k-Publications:  Intact cells|Intact cells]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Intact cells]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Intact cells]] |format=count}}
|-
| 4
| [[O2k-Publications: Permeabilized  cells|Permeabilized cells]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Permeabilized cells]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Permeabilized cells]] |format=count}}
|-
| 5
| [[O2k-Publications:  Permeabilized_tissue|Permeabilized tissue]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Permeabilized tissue]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Permeabilized tissue]] |format=count}}
|-
| 6
| [[O2k-Publications:  Homogenate|Homogenate]]
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Homogenate]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Homogenate]] |format=count}}
|-
| 7
| [[O2k-Publications: Isolated  Mitochondria|Isolated mitochondria]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Isolated mitochondria]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Isolated mitochondria]] |format=count}}
|-
| 8
| [[O2k-Publications: SMP|SMP]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::SMP]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::SMP]] |format=count}}
|-
| 9
| [[O2k-Publications: Chloroplasts|Chloroplasts]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Chloroplasts]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Chloroplasts]] |format=count}}
|-
| 10
| [[O2k-Publications: Enzyme|Enzyme]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Enzyme]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Enzyme]] |format=count}}
|-
| 11
| [[O2k-Publications: Oxidase; Biochemical Oxidation|Oxidase and biochemical oxidation]]  
| style="text-align:left"|
| style="text-align:left"|
| {{#ask:[[Category:Publications]] [[Instrument and  method::Oxygraph-2k]] [[Preparation::Oxidase;biochemical oxidation]] |format=count}}
| {{#ask:[[Category:Publications]] [[Preparation::Oxidase;biochemical oxidation]] |format=count}}
|-
|}




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! #
! O2k-Publications
! O2k-Publications
! MitoPedia: [[Pathway control state]]s
! MitoPedia: [[Coupling control state]]s
! Comment
! Comment
! O2k
! O2k

Revision as of 12:09, 11 November 2016

                

O2k-Publications: Topics

Mitochondria and cell research
O2k-Publications: chronological
Publications in the MiPMap


See also » O2k-Publications - chronological: 4713


Mitochondrial physiology: MiP areas


Pathological states

Alphabetical order


Stress conditions

Alphabetical order


Organisms

Mammals
Model organisms
Non-mammals
  • Birds (» Chicken)
  • Reptiles - turtles, lizards, snakes, crocodiles, alligators
  • Amphibians - frogs, toads, salamanders
  • Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish
  • Hexapods - insects, springtails; » Drosophila
  • Crustaceans - crabs, shrimp, barnacles, etc.; » Artemia
  • Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
  • Molluscs - gastropods, cephalopods, bivalves
  • Nematodes » Caenorhabditis elegans
  • Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
  • Fungi - yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae
  • Plants
  • Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
  • Eubacteria - true bacteria, cyanobacteria, spirochetes
  • Archaea - archaebacteria


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 188 263
2 Genital 92 123
3 Heart 725 937
4 Kidney 150 183
5 Liver 646 841
6 Lung;Gill 59 82
7 Nervous system 606 732
8 Skeletal muscle 1106 1370


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 254 320
2 Endothelial;epithelial;mesothelial cell 259 294
3 Fibroblast 207 271
4 Islet cell;pancreas;thymus 55 67
5 Lymphocyte 58 76
6 Platelet 121 151
7 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 14 16
2 HEK 95 116
3 HeLa 38 55
4 Neuroblastoma 43 50
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 37
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Intact organism 53 248
2 Intact organ 23 38
3 Intact cells 1165 1314
4 Permeabilized cells 716 754
5 Permeabilized tissue 1115 1209
6 Homogenate 377 421
7 Isolated mitochondria 1265 1572
8 SMP 10 28
9 Chloroplasts 2 10
10 Enzyme 39 102
11 Oxidase and biochemical oxidation 39 49


Enzymes

Alphabetical order

•• Adenine nucleotide translocase •• Complex I •• Complex II;succinate dehydrogenase •• Complex III •• Complex IV;cytochrome c oxidase •• Complex V;ATP synthase •• Inner mt-membrane transporter •• Marker enzyme •• Supercomplex •• TCA cycle and matrix dehydrogenases •• Uncoupling protein


Regulation

Alphabetical order

•• ADP •• ATP production •• Aerobic glycolysis •• Amino acid •• Calcium •• Coupling efficiency;uncoupling •• Cyt c •• Fatty acid •• Flux control •• Inhibitor •• Ion;substrate transport •• mt-Membrane potential •• Oxygen kinetics •• Q-junction effect •• Redox state •• Substrate •• Temperature •• Threshold;excess capacity •• Uncoupler


Coupling control states

# O2k-Publications MitoPedia: Coupling control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2870 3099
2 R ROUTINE ROUTINE respiration Physiological state, intact cells 894 981
3 E ETS Electron transfer system capacity Maximal noncoupled respiration 0 0
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2614 2773


Pathway control states

# O2k-Publications MitoPedia: Pathway control states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 610 754
2 N N-pathway control state NADH-linked, level 4 2478 2626
3 S S-pathway control state Succinate-linked, level 3 1689 1797
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183
5 DQ Duorquinol-linked, level 2 26 31
6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1581 1638
8 Other 133 149
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1522 1574


MiPMap combinations - examples

Examples for specific combinations
Browse data


O2k-Manuals and protocols and specific instrumental applications

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