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	Year	Reference	Coupling	Pathways	Preparations	Species;model	Tissue;cell
D'Souza 2018 J Lipid Res	2018	D'Souza K, Nzirorera C, Cowie AM, Varghese GP, Trivedi P, Eichmann TO, Biswas D, Touaibia M, Morris AJ, Aidinis V, Kane DA, Pulinilkunnil T, Kienesberger PC (2018) Autotaxin-LPA signaling contributes to obesity-induced insulin resistance in muscle and impairs mitochondrial metabolism. J Lipid Res 59:1805-17.	LEAK OXPHOS	F N S ROX	Permeabilized tissue	Mouse	Skeletal muscle
D'Souza 2020 Nutrients	2020	D'Souza K, Mercer A, Mawhinney H, Pulinilkunnil T, Udenigwe CC, Kienesberger PC (2020) Whey peptides stimulate differentiation and lipid metabolism in adipocytes and ameliorate lipotoxicity-induced insulin resistance in muscle cells. Nutrients 12:E425.	LEAK ET	F N	Permeabilized cells	Mouse	Skeletal muscle Fat
D'Urso 2020 Surg Endosc	2020	D'Urso A, Agnus V, Barberio M, Seeliger B, Marchegiani F, Charles AL, Geny B, Marescaux J, Mutter D, Diana M (2020) Computer-assisted quantification and visualization of bowel perfusion using fluorescence-based enhanced reality in left-sided colonic resections. Surg Endosc 35:4321-31.	LEAK OXPHOS	N NS		Human	Endothelial;epithelial;mesothelial cell
Da Silva 2017 Neurotox Res	2017	Da Silva JC, Amaral AU, Cecatto C, Wajner A, Dos Santos Godoy K, Ribeiro RT, de Mello Gonçalves A, Zanatta Â, da Rosa MS, Loureiro SO, Vargas CR, Leipnitz G, de Souza DOG, Wajner M (2017) α-Ketoadipic acid and α-aminoadipic acid cause disturbance of glutamatergic neurotransmission and induction of oxidative stress in vitro in brain of adolescent rats. Neurotox Res 32:276-90.	LEAK OXPHOS ET	N	Isolated mitochondria Homogenate	Rat	Nervous system
Dabbaghizadeh 2018 PLOS ONE	2018	Dabbaghizadeh A, Morrow G, Amer YO, Chatelain EH, Pichaud N, Tanguay RM (2018) Identification of proteins interacting with the mitochondrial small heat shock protein Hsp22 of Drosophila melanogaster: Implication in mitochondrial homeostasis. PLOS ONE 13:e0193771.	LEAK ROUTINE ET	ROX	Intact cells	Human	HeLa
Dabrowska 2023 Int J Mol Sci	2023	Dabrowska A, Zajac M, Bednarczyk P, Lukasiak A (2023) Effect of quercetin on mitoBK_Ca channel and mitochondrial function in human bronchial epithelial cells exposed to particulate matter. Int J Mol Sci 24:638. https://doi.org/10.3390/ijms24010638	LEAK ROUTINE OXPHOS ET	S ROX	Permeabilized cells Intact cells	Human	Lung;gill Endothelial;epithelial;mesothelial cell
Dahl 2015 Acta Physiol (Oxf)	2015	Dahl R, Larsen S, Dohlmann TL, Qvortrup K, Helge JW, Dela F, Prats C (2015) Three dimensional reconstruction of the human skeletal muscle mitochondrial network as a tool to assess mitochondrial content and structural organization. Acta Physiol (Oxf) 213:145-55.	LEAK OXPHOS ET	N CIV NS	Permeabilized tissue	Human	Skeletal muscle
Dahlke 2017 Glob Chang Biol	2017	Dahlke FT, Leo E, Mark FC, Pörtner HO, Bickmeyer U, Frickenhaus S, Storch D (2017) Effects of ocean acidification increase embryonic sensitivity to thermal extremes in Atlantic cod, Gadus morhua. Glob Chang Biol 23(4):1499-1510.	LEAK OXPHOS ET	N S NS ROX	Homogenate	Fishes
Dall 2019 J Biol Chem	2019	Dall M, Trammell SAJ, Asping M, Hassing AS, Agerholm M, Vienberg SG, Gillum MP, Larsen S, Treebak JT (2019) Mitochondrial function in liver cells is resistant to perturbations in NAD⁺ salvage capacity. J Biol Chem 294:13304-26.	LEAK OXPHOS ET	F N S	Intact cells	Mouse	Liver
Dall 2021 J Biol Chem	2021	Dall M, Hassing AS, Niu L, Nielsen TS, Ingerslev LR, Sulek K, Trammell SAJ, Gillum MP, Barrès R, Larsen S, Poulsen SS, Mann M, Ørskov C, Treebak JT (2021) Hepatocyte-specific perturbation of NAD⁺ biosynthetic pathways in mice induces reversible nonalcoholic steatohepatitis-like phenotypes. J Biol Chem 297:101388.	LEAK OXPHOS ET	N NS	Intact cells	Mouse	Liver
Dallon 2017 Biochem J	2017	Dallon BW, Parker BA, Hodson AE, Tippetts TS, Harrison ME, Appiah MMA, Witt JE, Gibbs JL, Gray HM, Sant TM, Bikman BT (2017) Insulin selectively reduces mitochondrial uncoupling in brown adipose tissue in mice. Biochem J 475:561-9.	LEAK OXPHOS ET	N NS ROX	Permeabilized tissue	Mouse	Skeletal muscle Fat
Damgaard 2022 iScience	2022	Damgaard MV, Nielsen TS, Basse AL, Chubanava S, Trost K, Moritz T, Dellinger RW, Larsen S, Treebak JT (2022) Intravenous nicotinamide riboside elevates mouse skeletal muscle NAD⁺ without impacting respiratory capacity or insulin sensitivity. https://doi.org/10.1016/j.isci.2022.103863	LEAK OXPHOS	N NS ROX	Permeabilized tissue	Mouse	Skeletal muscle
Damiano 2014 PLoS One	2014	Damiano M, Gautier CA, Bulteau AL, Ferrando-Miguel R, Gouarne C, Paoli MG, Pruss R, Auchère F, L'Hermitte-Stead C, Bouillaud F, Brice A, Corti O, Lombès A (2014) Tissue- and cell-specific mitochondrial defect in Parkin- deficient mice. PLoS One 9:e99898.	LEAK OXPHOS ET	N ROX	Isolated mitochondria	Mouse	Nervous system
Dandanell 2018 Scand J Med Sci Sports	2018	Dandanell S, Meinild-Lundby AK, Andersen AB, Lang PF, Oberholzer L, Keiser S, Robach P, Larsen S, Rønnestad BR, Lundby C (2018) Determinants of maximal whole-body fat oxidation in elite cross-country skiers: role of skeletal muscle mitochondria. Scand J Med Sci Sports 28:2494-504.	LEAK OXPHOS ET	F N NS	Permeabilized tissue	Human	Skeletal muscle
Dannheisig 2019 Cells	2019	Dannheisig DP, Beck E, Calzia E, Walther P, Behrends C, Pfister AS (2019) Loss of Peter Pan (PPAN) affects mitochondrial homeostasis and autophagic flux. Cells 8:E894.	LEAK ROUTINE ET	N S CIV NS ROX	Intact cells Permeabilized cells	Human	HeLa
Daradics 2022 PLoS One	2022	Daradics N, Horvath G, Tretter L, Paal A, Fulop A, Budai A, Szijarto A (2022) The effect of Cyclophilin D depletion on liver regeneration following associating liver partition and portal vein ligation for staged hepatectomy. https://doi.org/10.1371/journal.pone.0271606	LEAK OXPHOS	N S	Isolated mitochondria	Mouse	Liver
Darrell 2017 US Patent	2017	Neufer PD, Anderson EJ, Szeto HH (2017) Methods for preventing or treating insulin resistance. US Patent US20170100450 A1.	LEAK OXPHOS	F N S ROX	Permeabilized tissue	Human Rat	Skeletal muscle
Datzmann 2019 J Neurosurg	2019	Datzmann T, Kapapa T, Scheuerle A, McCook O, Merz T, Unmuth S, Hoffmann A, Mathieu R, Mayer S, Mauer UM, Roehrer S, Yilmazer-Hanke D, Moeller P, Nussbaum BL, Calzia E, Groeger M, Hartmann C, Radermacher P, Wepler M (2019) In-depth characterization of a long-term, resuscitated model of acute subdural hematoma-induced brain injury. https://doi.org/10.3171/2019.9.jns191789	LEAK OXPHOS ET	N NS	Homogenate	Pig	Nervous system
Datzmann 2019 Pharmacol Res	2019	Datzmann T, Hoffmann A, McCook O, Merz T, Wachter U, Preuss J, Vettorazzi S, Calzia E, Gröger M, Kohn F, Schmid A, Denoix N, Radermacher P, Wepler M (2019) Effects of sodium thiosulfate (Na₂S₂O₃) during resuscitation from hemorrhagic shock in swine with preexisting atherosclerosis. Pharmacol Res 151:104536.	LEAK OXPHOS	N NS	Homogenate	Pig	Heart Liver Kidney
Daura 2021 Neurobiol Dis	2021	Daura E, Tegelberg S, Yoshihara M, Jackson C, Simonetti F, Aksentjeff K, Ezer S, Hakala P, Katayama S, Kere J, Lehesjoki AE, Joensuu T (2021) Cystatin B-deficiency triggers ectopic histone H3 tail cleavage during neurogenesis. Neurobiol Dis 156:105418.	LEAK OXPHOS ET	N CIV NS	Permeabilized cells	Mouse	Stem cells Nervous system
Davidson 2020 Circ Res	2020	Davidson MT, Grimsrud P, Lai L, Draper J, Fisher-Wellman KH, Narowski TM, Koves TR, Kelly DP, Muoio DM (2020) Extreme acetylation of the cardiac mitochondrial proteome does not promote heart failure. Circ Res 127:1094-108.	LEAK	F N	Isolated mitochondria	Mouse	Heart
Davies 2016 Abstract Proceedings of The Physiological Society		Development of mitochondrial function in the cortex and cerebellum of the ovine fetus.	LEAK OXPHOS	N S NS	Homogenate	Bovines	Nervous system
Davies 2021 FASEB J	2021	Davies KL, Smith DJ, El-Bacha T, Stewart ME, Easwaran A, Wooding PFP, Forhead AJ, Murray AJ, Fowden AL, Camm EJ (2021) Development of cerebral mitochondrial respiratory function is impaired by thyroid hormone deficiency before birth in a region-specific manner. FASEB J 35:21591.	LEAK OXPHOS	N S NS	Homogenate	Other mammals	Nervous system
Davies 2022 Biomolecules	2022	Davies KL, Smith DJ, El-Bacha T, Wooding PFP, Forhead AJ, Murray AJ, Fowden AL, Camm EJ (2022) Cortisol regulates cerebral mitochondrial oxidative phosphorylation and morphology of the brain in a region-specific manner in the ovine fetus. https://doi.org/10.3390/biom12060768	LEAK OXPHOS	N S NS	Homogenate	Other mammals	Nervous system
Davila 2018 Elife	2018	Davila A, Liu L, Chellappa K, Redpath P, Nakamaru-Ogiso E, Paolella LM, Zhang Z, Migaud ME, Rabinowitz JD, Baur JA (2018) Nicotinamide adenine dinucleotide is transported into mammalian mitochondria. Elife 7:e33246.	LEAK OXPHOS ET	N	Isolated mitochondria	Mouse	Skeletal muscle Liver
Davis 2017 Tissue Eng Part C Methods	2017	Davis BN, Santoso JW, Walker MJ, Cheng CS, Koves TR, Kraus WE, Truskey GA (2017) Human, tissue-engineered, skeletal muscle myobundles to measure oxygen uptake and assess mitochondrial toxicity. Tissue Eng Part C Methods 23:189-99.	LEAK ROUTINE ET	ROX	Intact cells	Human	Skeletal muscle
Davis 2018 FASEB J	2018	Davis RAH, Deemer SE, Bergeron JM, Little JT, Warren JL, Fisher G, Smith DL Jr, Fontaine KR, Dickinson SL, Allison DB, Plaisance EP (2018) Dietary R, S-1,3-butanediol diacetoacetate reduces body weight and adiposity in obese mice fed a high-fat diet. FASEB J 33:2409-21.	LEAK OXPHOS	N NS	Permeabilized tissue	Mouse	Skeletal muscle
Davis 2021 Comparative Exercise Physiology	2021	Davis Michael, Barrett Montana, Popken Andrea (2021) Effect of hyperthermia and acidosis on equine skeletal muscle mitochondrial oxygen consumption. Comparative Exercise Physiology 17:171-179.	LEAK OXPHOS ET	N S NS	Permeabilized cells	Horse	Skeletal muscle
Davis 2021 J Appl Physiol	2021	Davis MS, Barrett MR (2021) Effect of conditioning and physiology hyperthermia on canine skeletal muscle mitochondrial oxygen consumption. J Appl Physiol. 130:1317-1325	LEAK OXPHOS	N S NS	Permeabilized cells	Dog	Skeletal muscle
Davis 2023 Am J Physiol Regul Integr Comp Physiol .	2023	Davis MS, Bayly WM, Hansen CM, Barrett MR, Blake CA (2023) Effects of hyperthermia and acidosis on mitochondrial production of reactive oxygen species. Am J Physiol Regul Integr Comp Physiol . 325(6):R725-R734.	LEAK OXPHOS	N S NS	Isolated mitochondria	Horse	Skeletal muscle
Davis 2023 MitoFit	2023	Davis MS, Barrett MR, Bayly WM, Bolinger A (2023) Effect of selected fluorophores on equine skeletal muscle mitochondrial respiration. MitoFit Preprints 2023.5. https://doi.org/10.26124/mitofit:2023-0005 — 2024-04-25 published in Bioenerg Commun 2024.2.	LEAK OXPHOS	N S	Isolated mitochondria	Horse	Skeletal muscle
Davis 2024 BEC	2024	Davis MS, Barrett MR, Bayly WM, Bolinger A (2024) Effect of selected fluorophores on equine skeletal muscle mitochondrial respiration. Bioenerg Commun 2024.2. https://doi.org/10.26124/bec:2024-0002	LEAK OXPHOS	N S	Isolated mitochondria	Horse	Skeletal muscle
Davoudi 2014 PLoS One	2014	Davoudi M, Kotarsky H, Hansson E, Fellman V (2014) Complex I function and supercomplex formation are preserved in liver mitochondria despite progressive Complex III deficiency. PLoS One 9:e86767.	LEAK OXPHOS ET	N S ROX	Isolated mitochondria	Mouse	Liver
Davoudi 2014 PhD Thesis	2014	Davoudi M (2014) Effect of experimental complex III deficiency on respiratory chain assembly and function. PhD Thesis 1-65.	LEAK OXPHOS ET	N S	Isolated mitochondria	Mouse	Liver
Davuluri 2016 J Physiol	2016	Davuluri G, Allawy A, Thapaliya S, Rennison JH, Singh D, Kumar A, Sandlers Y, Van Wagoner DR, Flask CA, Hoppel C, Kasumov T, Dasarathy S (2016) Hyperammonaemia-induced skeletal muscle mitochondrial dysfunction results in cataplerosis and oxidative stress. J Physiol 594:7341-60.	LEAK ROUTINE ET	ROX	Intact cells	Mouse	Skeletal muscle Other cell lines
Davuluri 2016 Proc Natl Acad Sci U S A	2016	Davuluri G, Song P, Liu Z, Wald D, Sakaguchi TF, Green MR, Devireddy L (2016) Inactivation of 3-hydroxybutyrate dehydrogenase 2 delays zebrafish erythroid maturation by conferring premature mitophagy. Proc Natl Acad Sci U S A 113:E1460-9.	LEAK ROUTINE ET		Intact cells	Zebrafish	Blood cells
Dawid 2020 Biochim Biophys Acta Bioenerg	2020	Dawid C, Weber D, Musiol E, Janas V, Baur S, Lang R, Fromme T (2020) Comparative assessment of purified saponins as permeabilization agents during respirometry. Biochim Biophys Acta Bioenerg 1861:148251.	LEAK ROUTINE OXPHOS ET	N S Gp NS ROX	Permeabilized cells Isolated mitochondria Intact cells	Human Mouse	Nervous system HEK
Dawson 2018 Acta Physiol (Oxf)	2018	Dawson NJ, Lyons SA, Henry DA, Scott GR (2018) Effects of chronic hypoxia on diaphragm function in deer mice native to high altitude. Acta Physiol (Oxf) 223:e13030.	LEAK OXPHOS	N CIV NS	Permeabilized tissue	Other mammals	Skeletal muscle
Dawson 2020 Exp Gerontol	2020	Dawson NJ, Salmón P (2020) Age-related increase in mitochondrial quantity may mitigate a decline in mitochondrial quality in red blood cells from zebra finches (Taeniopygia guttata). Exp Gerontol 133:110883.	LEAK ROUTINE ET	ROX	Intact cells	Birds	Blood cells
Dawson 2020 J Exp Biol	2020	Dawson NJ, Millet C, Selman C, Metcalfe NB (2020) Measurement of mitochondrial respiration in permeabilized fish gills. J Exp Biol 223:jeb216762.	LEAK OXPHOS	N CIV NS ROX	Permeabilized tissue	Fishes	Lung;gill
Dawson 2022 FASEB J	2022	Dawson NJ, Scott GR (2022) Adaptive increases in respiratory capacity and O₂ affinity of subsarcolemmal mitochondria from skeletal muscle of high-altitude deer mice. https://doi.org/10.1096/fj.202200219r	LEAK OXPHOS	F N CIV NS	Isolated mitochondria	Mouse	Skeletal muscle
De Andrade 2015 Exp Cell Res	2015	de Andrade DC, de Carvalho SN, Pinheiro D, Thole AA, Moura AS, de Carvalho L, Cortez EA (2015) Bone marrow mononuclear cell transplantation improves mitochondrial bioenergetics in the liver of cholestatic rats. Exp Cell Res 336:15-22.	LEAK OXPHOS	F NS	Permeabilized tissue	Rat	Liver
De Carvalho 2016 J Cell Biochem	2016	de Carvalho AK, da Silva S, Serafini E, de Souza DR, Farias HR, de Bem Silveira G, Silveira PC, de Souza CT, Portela LV, Muller AP (2016) Prior exercise training prevent hyperglycemia in STZ mice by increasing hepatic glycogen and mitochondrial function on skeletal muscle. J Cell Biochem 118:678-85.	LEAK OXPHOS	S	Homogenate	Mouse	Skeletal muscle Liver
De Carvalho 2017 Toxicol Research	2017	de Carvalho NR, Rodrigues NR, Macedo GE, Boligon AA, de Campos MM, Posser T, Cunha FAB, Coutinho HD, Klamt F, Bristot IJ, Merritt TJS, Franco JL (2017) Eugenia uniflora leaves essential oil promotes mitochondrial dysfunction in Drosophila melanogaster through the inhibition of oxidative phosphorylation. Toxicol Research 6:526-34 .	LEAK OXPHOS ET	F N NS ROX S	Isolated mitochondria	Drosophila
De Castro IP 2013 Cell Death Dis	2013	de Castro IP, Costa AC, Celardo I, Tufi R, Dinsdale D, Loh SH, Martins LM (2013) Drosophila ref(2)P is required for the parkin-mediated suppression of mitochondrial dysfunction in pink1 mutants. Cell Death Dis 24:e873.	LEAK OXPHOS ET	N S	Homogenate	Drosophila
De Godoy 2018 J Biol Chem	2018	de Godoy MA, Saraiva LM, de Carvalho LRP, Vasconcelos-Dos-Santos A, Beiral HJV, Ramos AB, Silva LRP, Leal RB, Monteiro VHS, Braga CV, de Araujo-Silva CA, Sinis LC, Bodart-Santos V, Kasai-Brunswick TH, Alcantara CL, Lima APCA, da Cunha-E Silva NL, Galina A, Vieyra A, De Felice FG, Mendez-Otero R, Ferreira ST (2018) Mesenchymal stem cells and cell-derived extracellular vesicles protect hippocampal neurons from oxidative stress and synapse damage induced by amyloid-β oligomers. J Biol Chem 293:1957-75.	LEAK ROUTINE ET		Intact cells	Rat	Nervous system
De Goede 2022 FASEB J	2022	de Goede P, Wüst RCI, Schomakers BV, Denis S, Vaz FM, Pras-Raves ML, van Weeghel M, Yi CX, Kalsbeek A, Houtkooper RH (2022) Time-restricted feeding during the inactive phase abolishes the daily rhythm in mitochondrial respiration in rat skeletal muscle. FASEB J 36:e22133.	LEAK OXPHOS ET	N S NS ROX	Permeabilized tissue	Rat	Skeletal muscle
De Jong 2022 Nutrients	2022	De Jong NP, Rudolph MC, Jackman MR, Sharp RR, Jones K, Houck J, Pan Z, Reusch JEB, MacLean PS, Bessesen DH, Bergouignan A (2022) Short-term adaptations in skeletal muscle mitochondrial oxidative capacity and metabolic pathways to breaking up sedentary behaviors in overweight or obese adults. https://doi.org/10.3390/nu14030454	LEAK OXPHOS ET	F N S NS ROX	Permeabilized tissue	Human	Skeletal muscle
De Lima Junior 2018 EBioMedicine	2018	De Lima Junior JC, Souza GF, Moura-Assis A, Gaspar RS, Gaspar JM, Rocha AL, Ferrucci DL, Lima TI, Victório SC, Bonfante ILP, Cavaglieri CR, Pareja JC, Brunetto SQ, Ramos CD, Geloneze B, Mori MA, Silveira LR, Segundo GRS, Ropelle ER, Velloso LA (2018) Abnormal brown adipose tissue mitochondrial structure and function in IL10 deficiency. EBioMedicine 39:436-47.	LEAK ET	N	Isolated mitochondria	Mouse	Fat
De Lourdes Jorge 2017 Transplant Proc	2017	de Lourdes Jorge G, Dos Reis Tártaro R, Fazzio Escanhoela CA, Boin IFSF (2017) Later evaluation of ischemia and reperfusion by the Pringle maneuver in Wistar rats, demonstrating that hepatic lesions can be reversible. Transplant Proc 49:898-901.	LEAK OXPHOS ET	N	Intact cells	Rat	Liver

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