Difference between revisions of "O2k-Publications: Topics"
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Revision as of 14:46, 9 March 2020
O2k-Publications: Topics
- Mitochondria and Cell Research - the Oroboros Ecosystem
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (363 entries) 363 516 2 Exercise physiology;nutrition;life style 756 1050 3 Comparative MiP;environmental MiP 325 477 4 Pharmacology;toxicology 844 1041 5 mt-Biogenesis;mt-density 248 331 6 Genetic knockout;overexpression 654 724 7 Instruments;methods 273 416
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 275 417 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 356 514 5 Cardiovascular 207 289 6 COPD 10 13 7 Diabetes 350 468 8 Inherited 64 99 9 Infectious 50 69 10 Myopathy 77 89 11 Neurodegenerative 169 235 12 Obesity 255 423 13 Parkinson's 67 104 14 Sepsis 74 85 15 Other 291 363
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 93 156 2 Cryopreservation 41 67 3 Hypoxia 117 229 4 Ischemia-reperfusion 326 433 5 Oxidative stress;RONS 581 839 6 Permeability transition 71 96 7 Temperature: hypothermia; hyperthermia 92 113
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (ยป Birds) 5 7 2 Zebrafish (ยป Fishes) 16 23 3 Drosophila (ยป Hexapods) 65 91 4 Caenorhabditis elegans (ยป Nematodes) 24 33 5 Artemia (ยป Crustaceans) 12 19 6 Saccharomyces cerevisiae (ยป Fungi) 61 88 7 Comparative MiP 325 477
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (ยป Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); ยป Zebrafish 116 153 5 Hexapods insects, springtails; ยป Drosophila 34 43 6 Crustaceans crabs, shrimp, barnacles, etc.; ยป Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes ยป Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; ยป Saccharomyces cerevisiae 52 63 12 Plants 29 58 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 188 263 2 Genital 92 123 3 Heart 723 935 4 Kidney 150 183 5 Liver 645 840 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1105 1369
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 259 294 3 Fibroblast 206 270 4 Islet cell;pancreas;thymus 55 67 5 Leukemia 22 25 6 Lymphocyte 58 76 7 Platelets 121 151 8 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 42 49 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Living organism 53 248 2 Intact organ 23 38 3 Living cells 1162 1311 4 Permeabilized cells 715 753 5 Permeabilized tissue 1114 1208 6 Homogenate 376 420 7 Isolated mitochondria 1262 1569 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 461 607 3 Complex II;succinate dehydrogenase CII 412 639 4 Complex III CIII 301 363 5 Complex IV;cytochrome c oxidase CIV 408 499 6 Complex V;ATP synthase CV 220 267 7 mt-Inner membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 49 78 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 82 109 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 152 207 2 ATP production 78 123 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 106 179 6 Coupling efficiency;uncoupling 82 163 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 127 159 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 131 169 11 Ion;substrate transport 64 115 12 mt-Membrane potential Mitochondrial membrane potential
- Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
- Fundamental relationships
- ยป Force
- ยป Affinity
- ยป Flux
- ยป Advancement
- ยป Advancement per volume
- ยป Stoichiometric number
- Fundamental relationships
- mt-Membrane potential and protonmotive force
- ยป Uncoupler
- O2k-Potentiometry
- ยป O2k-Catalogue: O2k-TPP+ ISE-Module
- ยป O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
- ยป TPP - O2k-Procedures: Tetraphenylphosphonium
- ยป Specifications: MiPNet15.08 TPP electrode
- ยป Poster
- ยป Unspecific binding of TPP+
- ยป TPP+ inhibitory effect
- O2k-Potentiometry
- O2k-Fluorometry
- ยป O2k-Catalogue: O2k-FluoRespirometer
- ยป O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
- ยป Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
- ยป TMRM - O2k-Procedures: TMRM
- O2k-Fluorometry
- O2k-Publications
117 180 13 Oxygen kinetics 107 148 14 Q-junction effect 13 56 15 Redox state 58 98 16 Substrate Fuel substrate kinetics 181 236 17 Temperature Temperature dependence 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2864 3093 2 R ROUTINE respiration Physiological state, living cells 892 979 3 E ET-capacity Maximal noncoupled respiration 2064 2175 4 L LEAK respiration Resting state, non-phosphorylating respiration 2609 2768
Pathway control states
# O2k-Publications MitoPedia: Electron transfer-pathway states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 608 752 2 N N-pathway control state NADH-linked, level 4 2473 2621 3 S S-pathway control state Succinate-linked, level 3 1684 1792 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1579 1636 8 Other 132 148 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1519 1571
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1105 1369 2 O2k-Publications: Human heart 723 935 3 O2k-Publications: Skeletal muscle - human vs mouse 39 48
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35