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From Bioblast
 YearReferenceCouplingPathwayPreparationOrganismTissue;cell
Garratt 2014 Proc Natl Acad Sci U S A2014Garratt M, Pichaud N, Glaros EN, Kee AJ, Brooks RC (2014) Superoxide dismutase deficiency impairs olfactory sexual signaling and alters bioenergetic function in mice. Proc Natl Acad Sci U S A 111:8119-24.LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized tissueMouseLiver
Slinde 2014 freepatentsonline.com2014Slinde E, Egelandsdal B (2014) Meat treatment and preservation method. Freepatentsonline.com 14/128207.LEAK
OXPHOS
ET		F
N
NS
ROX		Permeabilized tissueBovinesSkeletal muscle
Larsen 2014 World J Diabetes2014Larsen S, Skaaby S, Helge JW, Dela F (2014) Effects of exercise training on mitochondrial function in patients with type 2 diabetes. World J Diabetes 5:482-92.OXPHOSFPermeabilized tissueHumanSkeletal muscle
Rudnicki 2014 United States Patent Application Publication2014Rudnicki MA, Yin Hang (2014) MICRORNA INHIBITORS. United States Patent Application Publication 1-49.LEAK
ROUTINE
OXPHOS
ET		F
N
S
NS
ROX		Permeabilized cells
Intact cells		MouseSkeletal muscle
Fat
Worth 2014 J Biol Chem2014Worth AJ, Basu SS, Snyder NW, Mesaros C, Blair IA (2014) Inhibition of neuronal cell mitochondrial complex I with rotenone increases lipid β-oxidation, supporting acetyl-coenzyme A levels. J Biol Chem 289:26895-903. doi: 10.1074/jbc.M114.591354FIntact cellsNervous system
Ambrosio 2014 Free Radic Biol Med2014Ambrosio F, Brown E, Stolz D, Ferrari R, Goodpaster BH, Deasy B, Distefano G, Roperti A, Cheikhi A, Garciafigueroa Y, Barchowsky A (2014) Arsenic induces sustained impairment of skeletal muscle and muscle progenitor cell ultrastructure and bioenergetics. Free Radic Biol Med 74C:64-73.LEAK
OXPHOS
ET		F
N
NS		Permeabilized tissueMouseSkeletal muscle
Cavalcanti-de-Albuquerque 2014 J Appl Physiol2014Cavalcanti-de-Albuquerque JP, Salvador IC, Martins EL, Jardim-Messeder D, Werneck-de-Castro JP, Galina A, Carvalho DP (2014) Role of estrogen on skeletal muscle mitochondrial function in ovariectomized rats: a time course study in different fiber types. J Appl Physiol 116:779-89.LEAK
OXPHOS		F
N
Gp
NS
ROX		Permeabilized tissueRatSkeletal muscle
Koenemann 2014 Dissertation2014Koenemann B (2014) Einfluss der Hyperglykämie auf die mitochondriale Atmung von Leberzellen septischer Mäuse mit und ohne Imeglimin. PhD Thesis 1-61.LEAK
OXPHOS
ET		F
N
S
NS
Other combinations
ROX		HomogenateMouseLiver
Van Bree 2014 PhD Thesis2014van Bree B (2014) Mitochondria, lipotoxicity and skeletal muscle metabolism: implications for type 2 diabetes mellitus. PhD Thesis 1-150.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseSkeletal muscle
Williams 2014 PLoS One2014Williams CB, Hughes MC, Edgett BA, Scribbans TD, Simpson CA, Perry CG, Gurd BJ (2014) An examination of resveratrol's mechanisms of action in human tissue: impact of a single dose in vivo and dose responses in skeletal muscle ex vivo. PLoS One 9:e102406.OXPHOSF
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Divakaruni 2014 Curr Protoc Toxicol2014Divakaruni AS, Rogers GW, Murphy AN (2014) Measuring mitochondrial function in permeabilized cells using the Seahorse XF Analyzer or a clark-type oxygen electrode. Curr Protoc Toxicol 60:25.2.1-25.2.16.LEAK
OXPHOS
ET		F
N
S
Gp
CIV
ROX		Permeabilized cellsMouseSkeletal muscle
Other cell lines
Khrameeva 2014 Nat Commun2014Khrameeva EE, Bozek K, He L, Yan Z, Jiang X, Wei Y, Tang K, Gelfand MS, Prufer K, Kelso J, Pääbo S, Giavalisco P, Lachmann M, Khaitovich P (2014) Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nat Commun 5:3584. doi: 10.1038/ncomms4584FHuman
Chicco 2014 J Exp Biol2014Chicco AJ, Le CH, Schlater AE, Nguyen AD, Kaye SD, Beals JW, Scalzo RL, Bell C, Gnaiger E, Costa DP, Crocker DE, Kanatous SB (2014) High fatty acid oxidation capacity and phosphorylation control despite elevated leak and reduced respiratory capacity in northern elephant seal muscle mitochondria. J Exp Biol 217:2947-55.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHuman
Other mammals		Skeletal muscle
Ludzki 2014 Thesis2014Ludzki AC (2014) Palmitoyl-CoA inhibition of mitochondrial ADP sensitivity is attenuated by exercise training in human skeletal muscle. Master's Thesis 1-86.LEAK
OXPHOS		F
N
S
Gp
NS		Permeabilized tissueHuman
Mouse		Skeletal muscle
Boushel 2014 Acta Physiol (Oxf)2014Boushel RC, Ara I, Gnaiger E, Helge JW, Gonzalez-Alonzo J, Munck-Andersen T, Sondergaard H, Damsgaard R, van Hall G, Saltin B, Calbet JA (2014) Low intensity training increases peak arm VO2 by enhancing both convective and diffusive O2 delivery. Acta Physiol (Oxf) 211:122-34.LEAK
OXPHOS		F
N
NS		Permeabilized tissueHumanSkeletal muscle
Abdurrachim 2014 Biochim Biophys Acta2014Abdurrachim D, Ciapaite J, Wessels B, Nabben M, Luiken JJ, Nicolay K, Prompers JJ (2014) Cardiac diastolic dysfunction in high-fat diet fed mice is associated with lipotoxicity without impairment of cardiac energetics in vivo. Biochim Biophys Acta 1842:1525-37.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseHeart
Cahova 2014 Appl Physiol Nutr Metab2014Cahova M, Chrastina P, Hansikova H, Drahota Z, Trnovska J, Skop V, Spacilova J, Malinska HOliyarnyk O, Papackova Z, Palenickova E,Kazdova L (2014) Carnitine supplementation alleviates lipid metabolism derangements and protects against oxidative stress in non-obese hereditary hypertriglyceridemic rats. Appl Physiol Nutr Metab 40:280-91.OXPHOSF
N
S		Isolated mitochondriaRatLiver
Ryan 2014 J Physiol2014Ryan TE, Brophy P, Lin CT, Hickner RC, Neufer PD (2014) Assessment of in vivo skeletal muscle mitochondrial respiratory capacity in humans by near-infrared spectroscopy: a comparison with in situ measurements. J Physiol 592:3231-41.LEAK
OXPHOS		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Kukat 2014 PLoS Genet2014Kukat A, Dogan SA, Edgar D, Mourier A, Jacoby C, Maiti P, Mauer J, Becker C, Senft K, Wibom R, Kudin AP, Hultenby K, Flögel U, Rosenkranz S, Ricquier D, Kunz WS, Trifunovic A (2014) Loss of UCP2 attenuates mitochondrial dysfunction without altering ROS production and uncoupling activity. https://doi.org/10.1371/journal.pgen.1004385LEAK
OXPHOS
ET		F
N
S
NS
ROX		Isolated mitochondriaMouseHeart
Casanova 2014 J Nutr Biochem2014Casanova E, Baselga-Escudero L, Ribas-Latre A, Cedó L, Arola-Arnal A, Pinent M, Bladé C, Arola L, Salvadó MJ (2014) Chronic intake of proanthocyanidins and docosahexaenoic acid improves skeletal muscle oxidative capacity in diet-obese rats. J Nutr Biochem 25:1003–10.LEAK
OXPHOS
ET		F
N
S
NS		Isolated mitochondriaRatSkeletal muscle
Robach 2014 Med Sci Sports Exerc2014Robach P, Bonne T, Flück D, Bürgi S, Toigo M, Jacobs R, Lundby C (2014) Hypoxic training: effect on mitochondrial function and aerobic performance in hypoxia. Med Sci Sports Exerc 46:1936-45.FPermeabilized tissueHumanSkeletal muscle
Kivelae 2014 EMBO Mol Med2014Kivelä R, Bry M, Robciuc MR, Räsänen M, Taavitsainen M, Silvola JM, Saraste A, Hulmi JJ, Anisimov A, Mäyränpää MI, Lindeman JH, Eklund L, Hellberg S, Hlushchuk R, Zhuang ZW, Simons M, Djonov V, Knuuti J, Mervaala E, Alitalo K (2016) VEGF-B-induced vascular growth leads to metabolic reprogramming and ischemia resistance in the heart. EMBO Mol Med 6:307-21.LEAK
OXPHOS
ET		F
N
S
NS		HomogenateRatHeart
Cedikova 2014 Evid Based Complement Alternat Med2014Cedikova M, Miklikova M, Stachova L, Grundmanova M, Tuma Z, Vetvicka V, Zech N, Kralickova M, Kuncova J (2014) Effects of the Czech propolis on sperm mitochondrial function. Evid Based Complement Alternat Med 248768.LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized cellsHumanGenital
Jacobs 2013 Exp Physiol2013Jacobs R, Boushel RC, Wright-Paradis C, Calbet JA, Robach P, Gnaiger E, Lundby C (2013) Mitochondrial function in human skeletal muscle following high altitude exposure. Exp Physiol 98:245-55.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueHumanSkeletal muscle
Yin 2013 Cell Metab2013Yin H, Pasut A, Soleimani VD, Bentzinger CF, Antoun G, Thorn S, Seale P, Fernando P, van Ijcken W, Grosveld F, Dekemp RA, Boushel RC, Harper ME, Rudnicki MA (2013) MicroRNA-133 controls brown adipose determination in skeletal muscle satellite cells by targeting Prdm16. Cell Metab 17:210-24.FPermeabilized tissue
Intact cells		MouseSkeletal muscle
Fat
Jacobs 2013 J Gerontol A Biol Sci Med Sci2013Jacobs R, Diaz V, Soldini L, Haider T, Thomassen M, Nordsborg NB, Gassmann M, Lundby C (2013) Fast-twitch glycolytic skeletal muscle is predisposed to age-induced impairments in mitochondrial function. J Gerontol A Biol Sci Med Sci 68:1010-22.LEAK
OXPHOS
ET		F
N
S
NS
ROX		Permeabilized tissueMouseSkeletal muscle
Roy 2013 PLoS One2013Roy C, Paglialunga S, Schaart G, Moonen-Kornips E, Meex RC, Phielix E, Hoeks J, Hesselink MK, Cianflone K, Schrauwen P (2013) Relationship of C5L2 receptor to skeletal muscle substrate utilization. PLoS One 8:e57494.F
N
S		Isolated mitochondriaHuman
Mouse		Skeletal muscle
Perevoshchikova 2013 Free Radic Biol Med2013Perevoshchikova IV, Quinlan CL, Orr AL, Gerencser AA, Brand MD (2013) Sites of superoxide and hydrogen peroxide production during fatty acid oxidation in rat skeletal muscle mitochondria. Free Radic Biol Med 61:298-309. doi: 10.1016/j.freeradbiomed.2013.04.006LEAK
OXPHOS
ET		F
S		Isolated mitochondriaRatSkeletal muscle
Jaburek 2013 Int J Biochem Cell Biol2013Jabůrek M, Ježek J, Zelenka J, Ježek P (2013) Antioxidant activity by a synergy of redox-sensitive mitochondrial phospholipase A2 and uncoupling protein-2 in lung and spleen. Int J Biochem Cell Biol 45:816-25.F
S		Isolated mitochondriaMouse
Wohlwend 2013 Thesis2013Wohlwend M (2013) Mitochondrial function in health and disease - high-resolution respirometry in rats inbred for high vs. low running capacity. Thesis Norwegian University of Science and Technology - Trondheim: 44pp.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized tissueRatHeart
Skeletal muscle
Kiebish 2013 J Lipid Res2013Kiebish MA, Yang K, Liu X, Mancuso DJ, Guan S, Zhao Z, Sims HF, Cerqua R, Cade WT, Han X, Gross RW (2013) Dysfunctional cardiac mitochondrial bioenergetic, lipidomic, and signaling in a murine model of Barth syndrome. J Lipid Res 54:1312-25.LEAK
OXPHOS		F
N
S
NS		Isolated mitochondriaMouseHeart
Felser 2013 Toxicol Sci2013Felser A, Blum K, Lindinger PW, Bouitbir J, Kraehenbuehl S (2013) Mechanisms of hepatocellular toxicity associated with dronedarone - a comparison to amiodarone. Toxicol Sci 131:480-90.F
N
S		Isolated mitochondriaHuman
Rat		Liver
Jacobs 2013 J Appl Physiol2013Jacobs R, Flück D, Bonne TC, Bürgi S, Christensen PM, Toigo M, Lundby C (2013) Improvements in exercise performance 1 with high-intensity interval training 2 coincide with an increase in skeletal muscle mitochondrial content and function. J Appl Physiol 115:785-93.LEAK
OXPHOS
ET		F
N
S
CIV
NS
ROX		Permeabilized tissueHumanSkeletal muscle
Wone 2013 Comp Biochem Physiol A Mol Integr Physiol2013Wone BW, Donovan ER, Cushman JC, Hayes JP (2013) Metabolic rates associated with membrane fatty acids in mice selected for increased maximal metabolic rate. Comp Biochem Physiol A Mol Integr Physiol 165:70-8.FMouse
Jacobs 2013 Am J Physiol Endocrinol Metab2013Jacobs R, Meinild AK, Nordsborg NB, Lundby C (2013) Lactate oxidation in human skeletal muscle mitochondria. Am J Physiol Endocrinol Metab 304:686-94.LEAK
OXPHOS		F
N
S
NS
ROX		Permeabilized tissueHumanSkeletal muscle
Lanza 2013 Am J Physiol Endocrinol Metab2013Lanza IR, Blachnio-Zabielska A, Johnson ML, Schimke JM, Jakaitis DR, Lebrasseur NK, Jensen MD, Sreekumaran Nair K, Zabielski P (2013) Influence of fish oil on skeletal muscle mitochondrial energetics and lipid metabolites during high-fat diet. Am J Physiol Endocrinol Metab 304:E1391-403.LEAK
OXPHOS		F
N
S
NS
ROX		Isolated mitochondriaMouseSkeletal muscle
Van Eunen 2013 PLoS Comput Biol2013van Eunen K, Simons SM, Gerding A, Bleeker A, den Besten G, Touw CM, Houten SM, Groen BK, Krab K, Reijngoud DJ, Bakker BM (2013) Biochemical competition makes fatty-acid β-oxidation vulnerable to substrate overload. PLoS Comput Biol 9:e1003186.ETF
N		Isolated mitochondriaRatLiver
Ka 2013 Physiol Genomics2013Ka S, Markljung E, Ring H, Albert FW, Harun-Or-Rashid M, Wahlberg P, Garcia-Roves PM, Zierath JR, Denbow DM, Pääbo S, Siegel PB, Andersson L, Hallböök F (2013) Expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight. Physiol Genomics 45:367-76. doi: 10.1152/physiolgenomics.00078.2012FEnzymeChickenSkeletal muscle
Nervous system
Liver
Fat
Cavallo 2013 PLoS One2013Cavallo A, Priore P, Gnoni GV, Papa S, Zanotti F, Gnoni A (2013) 3,5-Diiodo-L-thyronine administration to hypothyroid rats rapidly enhances fatty acid oxidation rate and bioenergetic parameters in liver cells. PLoS One 8:e52328. doi: 10.1371/journal.pone.0052328LEAK
OXPHOS
ET		F
S
NS		Isolated mitochondriaRatLiver
Larsen 2012 J Physiol2012Larsen S, Nielsen J, Neigaard Nielsen C, Nielsen LB, Wibrand F, Stride N, Schroder HD, Boushel RC, Helge JW, Dela F, Hey-Mogensen M (2012) Biomarkers of mitochondrial content in skeletal muscle of healthy young human subjects. J Physiol 590:3349-60.LEAK
OXPHOS
ET		F
N
S
CIV
NS		Permeabilized tissueHumanSkeletal muscle
Stephenson 2012 J Appl Physiol (1985)2012Stephenson EJ, Stepto NK, Koch LG, Britton SL, Hawley JA (2012) Divergent skeletal muscle respiratory capacities in rats artificially selected for high and low running ability: a role for Nor1? J Appl Physiol (1985) 113:1403-12.LEAK
OXPHOS
ET		F
N
S
CIV
NS
Other combinations
ROX		Permeabilized tissueRatSkeletal muscle
Kwak 2012 Free Radic Biol Med2012Kwak HB, Thalacker-Mercer A, Anderson EJ, Lin CT, Kane DA, Lee NS, Cortright RN, Bamman MM, Neufer PD (2012) Simvastatin impairs ADP-stimulated respiration and increases mitochondrial oxidative stress in primary human skeletal myotubes. Free Radic Biol Med 52:198-207.LEAK
OXPHOS
ET		F
N
S
NS		Permeabilized cells
Intact cells		HumanSkeletal muscle
Other cell lines
Picard 2012 Am J Respir Crit Care Med2012Picard M, Jung B, Liang F, Azuelos I, Hussain S, Goldberg P, Godin R, Danialou G, Chaturvedi R, Rygiel K, Matecki S, Jaber S, Des Rosiers C, Karpati G, Ferri L, Burelle Y, Turnbull DM, Taivassalo T, Petrof BJ (2012) Mitochondrial dysfunction and lipid accumulation in the human diaphragm during mechanical ventilation. Am J Respir Crit Care Med 186:1140-9. https://doi.org/10.1164/rccm.201206-0982OCF
Pesta 2012 Methods Mol Biol2012Pesta D, Gnaiger E (2012) High-resolution respirometry. OXPHOS protocols for human cells and permeabilized fibers from small biopsies of human muscle. Methods Mol Biol 810:25-58. https://doi.org/10.1007/978-1-61779-382-0_3LEAK
ROUTINE
OXPHOS
ET		F
N
S
NS
ROX		Permeabilized cells
Permeabilized tissue
Intact cells		HumanSkeletal muscle
Other cell lines
HEK
Fibroblast
HUVEC
Lou 2012 Cardiovasc Res2012Lou PH, Zhang L, Lucchinetti E, Heck M, Affolter A, Gandhi M, Kienesberger PC, Hersberger M, Clanachan AS, Zaugg M (2012) Infarct-remodeled hearts with limited oxidative capacity boost fatty acid oxidation after conditioning against ischemia/reperfusion injury. Cardiovasc Res 97:251-61.OXPHOSF
N
S
NS		Permeabilized tissueRatHeart
Stride 2012 Front Physiol2012Stride N, Larsen S, Treebak JT, Hansen CN, Hey-Mogensen M, Speerschneider T, Jensen TE, Jeppesen J, Wojtaszewski JF, Richter EA, Køber L, Dela F (2012) 5'-AMP activated protein kinase is involved in the regulation of myocardial β-oxidative capacity in mice. Front Physiol 3:33.OXPHOSFPermeabilized tissueMouseHeart
Joergensen 2012 Am J Physiol Endocrinol Metab2012Jørgensen W, Jelnes P, Rud KA, Hansen LL, Grunnet N, Quistorff B (2012) Progression of type 2 diabetes in GK rats affects muscle and liver mitochondria differently: pronounced reduction of Complex II flux is observed in liver only. Am J Physiol Endocrinol Metab 303:E515-23.LEAK
OXPHOS		F
S
Other combinations		RatSkeletal muscle
Liver
Hoeks 2012 J Cell Physiol2012Hoeks J, Arany Z, Phielix E, Moonen-Kornips E, Hesselink MK, Schrauwen P (2012) Enhanced lipid -but not carbohydrate- supported mitochondrial respiration in skeletal muscle of PGC-1α overexpressing mice. J Cell Physiol 227:1026-33.LEAK
OXPHOS
ET		F
N		Isolated mitochondriaMouseSkeletal muscle
Rosca 2012 Diabetes2012Rosca MG, Vazquez EJ, Chen Q, Kerner J, Kern TS, Hoppel CL (2012) Oxidation of fatty acids is the source of increased mitochondrial reactive oxygen species production in kidney cortical tubules in early diabetes. Diabetes 61:2074-83. https://doi.org/10.2337/db11-1437F
Begriche 2011 J Hepatol2011Begriche K, Massart J, Robin MA, Borgne-Sanchez A, Fromenty B (2011) Drug-induced toxicity on mitochondria and lipid metabolism: mechanistic diversity and deleterious consequences for the liver. J Hepatol 54:773-94. https://doi.org/10.1016/j.jhep.2010.11.006F
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