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Difference between revisions of "ET capacity"

From Bioblast
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== Related terms in Bioblast ==
== Related terms in Bioblast ==
[[Image:OXPHOS-coupled energy cycles.jpg|right|300px||link=Gnaiger 2012 MitoPathways|OXPHOS-coupled energy cycles. Source: The blue book]]
[[Image:OXPHOS-coupled energy cycles.jpg|right|300px||link=Gnaiger 2012 MitoPathways|OXPHOS-coupled energy cycles. Source: The blue book]]
[[File:ROX.jpg|link=Residual oxygen consumption]] [[Residual oxygen consumption |ROX]], ''R''
[[File:L.jpg |link=LEAK respiration]] [[LEAK respiration |LEAK]], ''L''


[[File:L.jpg]] [[LEAK respiration |LEAK]], ''L''
[[File:R.jpg |link=ROUTINE respiration]] [[ROUTINE respiration |ROUTINE]], ''R''


[[File:R.jpg]] [[ROUTINE respiration |ROUTINE]], ''R''
[[File:P.jpg |link=OXPHOS capacity]] [[OXPHOS capacity |OXPHOS]], ''P''


[[File:P.jpg]] [[Oxidative phosphorylation |OXPHOS]], ''P''
[[File:E.jpg |link=ETS capacity]] [[ETS capacity |ETS]], ''E''
 
[[File:ROX.jpg |link=Residual oxygen consumption]] [[Residual oxygen consumption |ROX]], ''R''


[[File:E.jpg]] [[Electron transfer system |ETS]], ''E''





Revision as of 22:38, 22 June 2014


high-resolution terminology - matching measurements at high-resolution


ET capacity

Description

E.jpg ETS capacity is the respiratory electron transfer system capacity, E, of mitochondria in the experimentally induced noncoupled state. In this condition E, the mt-membrane potential is almost fully collapsed and provides a reference state for flux control ratios. In intact mitochondria, the ETS capacity depends not only on the inner membrane-bound ETS (mETS, with respiratory Complexes CI to CIV, electron-transferring flavoprotein ETF, and glycerophosphate dehydrogenase) but also integrates transporters across the inner mt-membrane, the TCA cycle and other matrix dehydrogenases. Its experimental determination in mitochondrial preparations or intact cells requires the measurement of oxygen consumption in the presence of defined substrates and of an established uncoupler at optimum concentration. This optimum concentration is determined by titration of the uncoupler to the concentration inducing maximum flux. > MiPNet article

Abbreviation: E

Reference: Gnaiger 2012 MitoPathways, Gnaiger 2009 Int J Biochem Cell Biol


MitoPedia methods: Respirometry 


MitoPedia topics: "Respiratory state" is not in the list (Enzyme, Medium, Inhibitor, Substrate and metabolite, Uncoupler, Sample preparation, Permeabilization agent, EAGLE, MitoGlobal Organizations, MitoGlobal Centres, ...) of allowed values for the "MitoPedia topic" property. Respiratory state"Respiratory state" is not in the list (Enzyme, Medium, Inhibitor, Substrate and metabolite, Uncoupler, Sample preparation, Permeabilization agent, EAGLE, MitoGlobal Organizations, MitoGlobal Centres, ...) of allowed values for the "MitoPedia topic" property. 

Why not State 3u?

Publications in the MiPMap
Gnaiger E (2014) Why not State 3u? Mitochondr Physiol Network 2014-06-22.


OROBOROS (2014) MiPNet

Abstract: E.jpg Measurement of ETS capacity in the noncoupled state at optimum uncoupler concentration does not represent a general substitute for determination of OXPHOS capacity (compare State 3). If the ratio of OXPHOS/ETS capacity (P/E ratio) is less than one, noncoupled respiration overestimates the apparent reserve capacity for oxidative phosphorylation with respect to ROUTINE respiration of intact cells.

File:ETS.png
Noncoupled respiration with a shortcircuit of the proton cycle across the inner mt-membrane at optimum uncoupler (protonophore) concentration stimulating maximum oxygen flux. 2[H] indicates the reduced hydrogen equivalents of CHO substrates and electron transfer to oxygen. H+out are protons pumped out of the matrix phase. Proton leaks dissipate energy of translocated protons. ETS capacity is not limited by the capacity of the phosphorylation system (uncontrolled state; modified after Gnaiger 2012 MitoPathways).


O2k-Network Lab: AT Innsbruck Gnaiger E


Labels:




Coupling state: ETS"ETS" is not in the list (LEAK, ROUTINE, OXPHOS, ET) of allowed values for the "Coupling states" property. 

HRR: Theory 



The important difference between states P and E

The abbreviation State 3u is used frequently in bioenergetics, to indicate the noncoupled state of maximum respiration, E,[1] without sufficient emphasis on the fundamental difference between state P (OXPHOS capacity; coupled, with an uncoupled component; State 3) and state E (ETS capacity, noncoupled).[2],[3]


  • P=E: The specific case of equal OXPHOS and ETS capacity (P/E=1) yields the important information that the capacity of the phosphorylation system matches or is in potential excess of the ETS capacity, such that OXPHOS capacity is not limited by the phosphorylation system in the specific mitochondria. This varies with species and tissues, and changes as a result of pathologies due to defects in the phosphorylation system. An example for P/E=1 is mouse skeletal muscle mitochondria. [4]
  • P<E: When OXPHOS is less than ETS capacity, the phosphorylation system limits OXPHOS capacity, and there is an apparent ETS excess capacity. For example, this is the case in healthy human skeletal muscle mitochondria. [5]
  • P>E: If ETS is less than OXPHOS capacity in intact cells, or in mitochondrial preparations with defined substrate(s), then you have encountered an experimental artefact, and the apparent ETS capacity is too low. Artificially low ETS capacity may be obtained due to overtitration of uncoupler. Inhibitors of ATP synthase may suppress ETS capacity in intact cells, particularly in stressed cells.

Consequences for evaluation of coupling

In some textbooks on Bioenergetics, the RCR is defined as either the State 3/State 4 ratio or the State 3u/State 4 ratio. This reflects lack of conceptual distinction between State 3 (or P) and 3u (E), and clarification is best achieved by avoiding ambiguous terminology. RCR as defined originally is the 'acceptor control ratio' or 'adenylate control ratio' (see LEAK control ratio, L/E).[6] ETS capacity but not OXPHOS capacity provides a valid reference for an index of uncoupling.


Related terms in Bioblast

OXPHOS-coupled energy cycles. Source: The blue book

L.jpg LEAK, L

R.jpg ROUTINE, R

P.jpg OXPHOS, P

E.jpg ETS, E

ROX.jpg ROX, R


References

  1. Gnaiger E. Electron transfer system versus electron transport chain. Mitochondr Physiol Network. »Electron transfer system
  2. Gnaiger E (2009) Capacity of oxidative phosphorylation in human skeletal muscle. New perspectives of mitochondrial physiology. Int J Biochem Cell Biol 41: 1837-1845. »PMID: 19467914
  3. Gnaiger E (2012) Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis. 3rd ed. Mitochondr Physiol Network 17.18. OROBOROS MiPNet Publications, Innsbruck: 64 pp. »Open Access
  4. Aragonés J, Schneider M, Van Geyte K, Fraisl P, Dresselaers T, Mazzone M, Dirkx R, Zacchigna S, Lemieux H, Jeoung NH, Lambrechts D, Bishop T, Lafuste P, Diez-Juan A, K Harten S, Van Noten P, De Bock K, Willam C, Tjwa M, Grosfeld A, Navet R, Moons L, Vandendriessche T, Deroose C, Wijeyekoon B, Nuyts J, Jordan B, Silasi-Mansat R, Lupu F, Dewerchin M, Pugh C, Salmon P, Mortelmans L, Gallez B, Gorus F, Buyse J, Sluse F, Harris RA, Gnaiger E, Hespel P, Van Hecke P, Schuit F, Van Veldhoven P, Ratcliffe P, Baes M, Maxwell P, Carmeliet P (2008) Deficiency or inhibition of oxygen sensor Phd1 induces hypoxia tolerance by reprogramming basal metabolism. Nat Genet 40: 170-180. »Open Access
  5. Pesta D, Hoppel F, Macek C, Messner H, Faulhaber M, Kobel C, Parson W, Burtscher M, Schocke M, Gnaiger E (2011) Similar qualitative and quantitative changes of mitochondrial respiration following strength and endurance training in normoxia and hypoxia in sedentary humans. Am J Physiol Regul Integr Comp Physiol 301: R1078–R1087. »Open Access
  6. Gnaiger E. Biochemical coupling efficiency: from 0 to <1. Mitochondr Physiol Network. »Biochemical coupling efficiency